PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32422_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 156aa    MW: 18035.2 Da    PI: 6.1086
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32422_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-113277550
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                                ++ +r+++NRe+ArrsR RK+++++ L      L + N +    ++
  Cotton_A_32422_BGI-A2_v1.0 32 RKRKRMESNRESARRSRMRKQKYLDDLMAQLTLLRKDNNQILTSIN 77
                                5789**********************************98776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-162892IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-1029107No hitNo description
PROSITE profilePS5021710.1053093IPR004827Basic-leucine zipper domain
PfamPF001701.6E-93284IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-123285No hitNo description
CDDcd147022.10E-173383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGNSNS SGLTLLQISG SEEDLHQLMN ERKRKRMESN RESARRSRMR KQKYLDDLMA  60
QLTLLRKDNN QILTSINFIT HHYFNIEAEN SVLRAQLMEL SQRLDSLNHI LNYLSDPTLN  120
NGIWVYETEP FETSADSFTN FTLNQPIVAS ADIFQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMESNRESARRSRMRKQK
24451RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639576.11e-112PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L52e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1U8KLG21e-109A0A1U8KLG2_GOSHI; bZIP transcription factor 53-like
STRINGGorai.002G126500.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-42basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]