PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32389_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92081.3 Da PI: 6.0988 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.7e-21 | 149 | 204 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t+ q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Cotton_A_32389_BGI-A2_v1.0 149 KKKYHRHTPRQIQELESFFKECPHPDEKQRMELSRRLGLEGKQIKFWFQNRRTQMK 204 79999************************************************999 PP | |||||||
2 | START | 170.2 | 1.4e-53 | 350 | 572 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 +a++a++el+k+a+ + p+W k es+n +e++++f++ + + +ea +a+g+v lve l+d + +W e+ Cotton_A_32389_BGI-A2_v1.0 350 VALSAMDELIKMAQMDNPLWIKGMgggmESLNVEEYRRNFSSCIGmkpssYATEATKATGLVYLRGLALVEALMDAN-RWVEM 431 7899************************************98888********************************.***** PP -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147 ++ +a+t++v+ssg ++lq+m ae+q+lsplvp R + f+R+++q+++g+w++vdvS+d+ q+ ++++ + +++ Cotton_A_32389_BGI-A2_v1.0 432 FPcmisRAATIDVLSSGtgvtrdNELQVMDAEFQVLSPLVPvRQVRFIRFCKQHSEGVWAVVDVSIDPSQDATNTQMFPNCRR 514 *********************************************************************************** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 lpSg++i++++ sk+twveh +++++ +h ll++l++sg +ga +w+atlqrqc Cotton_A_32389_BGI-A2_v1.0 515 LPSGCVIQDVDTKCSKITWVEHSEYDDSAVHHLLQPLLSSGFGFGAHRWLATLQRQCD 572 ********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 136 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-20 | 137 | 206 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.54 | 146 | 206 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-18 | 148 | 210 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.0E-19 | 149 | 204 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.19E-19 | 149 | 206 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 181 | 204 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.59 | 340 | 576 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-30 | 342 | 572 | No hit | No description |
CDD | cd08875 | 3.11E-105 | 344 | 571 | No hit | No description |
SMART | SM00234 | 1.3E-34 | 349 | 573 | IPR002913 | START domain |
Pfam | PF01852 | 3.4E-46 | 350 | 572 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.67E-19 | 602 | 836 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MSFGGLINSS SSSDSGSSGA RVVVADFVPQ NNMLSYAIVE PPLLTQHIPI SMLSSPSLSL 60 SYVLAHLPLP LPPPLPPSLF LFLSLSRDLV LVQKRMDGHG EMGLIGENFD PGFVGRMKED 120 GYEIRSESDN FDVASGDDQD AAADGPSKKK KYHRHTPRQI QELESFFKEC PHPDEKQRME 180 LSRRLGLEGK QIKFWFQNRR TQMKTQLERH ENVILRQEND KLRAENDLLK QAMTTPICSS 240 CGGPAVPGEI SYEQHQLRIE NARLKDELTR ICALTNKFLG RPLSSSGSPI PPHGLNSNLE 300 LAVGRNGFGG LNNAGTSLPM GFEFGDGSMM SIVKPMVNEM QYDRSAFVDV ALSAMDELIK 360 MAQMDNPLWI KGMGGGMESL NVEEYRRNFS SCIGMKPSSY ATEATKATGL VYLRGLALVE 420 ALMDANRWVE MFPCMISRAA TIDVLSSGTG VTRDNELQVM DAEFQVLSPL VPVRQVRFIR 480 FCKQHSEGVW AVVDVSIDPS QDATNTQMFP NCRRLPSGCV IQDVDTKCSK ITWVEHSEYD 540 DSAVHHLLQP LLSSGFGFGA HRWLATLQRQ CDCMAILMSQ DIPGENNTGI TPAGRKSMIK 600 LAQRMTYNFC AGVCASSVHK WDKLSVGNVG EDVRVMTRKN INDPGEPHGV VLSAATSVWM 660 PVTQERLFDF LRDERMRSEW DILSHGGPMQ EMVHVAKGMG HGNCVSLLRG SAINANENNM 720 LILQETWSDA SGALVVYAPV DISSMSVVMN GGDSTYVALL PSGFAILPGI SPSYHGGRSE 780 SNGALVKPEI DGSIVSGCLL TVGFQILVNN VPTAKLTVES VETVNNLISC TIQKIKAALT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646295.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1U8NWL9 | 0.0 | A0A1U8NWL9_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
STRING | Gorai.004G120700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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