PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32300_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26819.8 Da    PI: 4.443
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32300_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-182881356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                ++++f++eq++ Le +Fe++  +   ++ e Ak+lgL  rqV +WFqN+Ra++k
  Cotton_A_32300_BGI-A2_v1.0 28 NKRRFSDEQIKSLELMFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWK 81
                                5679*************************************************9 PP
2HD-ZIP_I/II116.12.1e-3728119293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 +krr+s+eq+k+LE +Fe+e++Lep +K e+a+eLgl+prqva+WFqn+RAR+k+kqlE+dy+ L+++y+ l+++ e+L+ke+
  Cotton_A_32300_BGI-A2_v1.0  28 NKRRFSDEQIKSLELMFESETRLEPGKKLEVAKELGLHPRQVAIWFQNKRARWKSKQLEQDYSILQANYNILASKLESLKKEK 110
                                 79********************************************************************************* PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                 + L  +l++
  Cotton_A_32300_BGI-A2_v1.0 111 QGLVIQLQK 119
                                 ***999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-171385IPR009057Homeodomain-like
PROSITE profilePS5007116.7792383IPR001356Homeobox domain
SMARTSM003891.9E-152587IPR001356Homeobox domain
PfamPF000462.4E-152881IPR001356Homeobox domain
CDDcd000862.00E-132984No hitNo description
Gene3DG3DSA:1.10.10.601.5E-182990IPR009057Homeodomain-like
PRINTSPR000311.8E-55463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000311.8E-56379IPR000047Helix-turn-helix motif
PfamPF021832.5E-1283124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MIFDGGDNYT QEMMSVTGIS TTKTKNNNKR RFSDEQIKSL ELMFESETRL EPGKKLEVAK  60
ELGLHPRQVA IWFQNKRARW KSKQLEQDYS ILQANYNILA SKLESLKKEK QGLVIQLQKL  120
NHLLKKPEEE GQCCEQVTSM NSIDGESDQG EGVKSDSEGQ LSLSMERSEH ALGGVSDDDS  180
GIKIDCFGLE EKLNFISMAE PADGSLTSSE EWQSFDSDDL FDRYSSGYEW WDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673458.11e-173PREDICTED: homeobox-leucine zipper protein ATHB-12-like
RefseqXP_017647333.11e-173PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1U8IB001e-171A0A1U8IB00_GOSHI; homeobox-leucine zipper protein ATHB-12-like
STRINGGorai.001G152200.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-62homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]