PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32253_BGI-A2_v1.0
Common NameF383_08663
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 270aa    MW: 30040.8 Da    PI: 6.1679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32253_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.1e-54851891102
                       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 
                                 ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+dia
  Cotton_A_32253_BGI-A2_v1.0  85 QLQMFWANQmqeIEHASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFVLELTLRSWIHTEENKRRTLQKNDIA 167
                                 89******9778899******************************************************************** PP

                       NF-YC  81 aavtrtdifdflvdivprdelk 102
                                 aa++rtd+fdflvdi+prdelk
  Cotton_A_32253_BGI-A2_v1.0 168 AAISRTDVFDFLVDIIPRDELK 189
                                 *******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.9E-3463179IPR009072Histone-fold
PfamPF008088.8E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.9E-37108185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDRSEQTEQQ QQQQQSVMGV VAGTGPMGYS TGPYQAAPVA ASGTPATAVP SPTQPPATFS  60
GSPHQLAYQQ AQQFHHQQQQ QQHQQLQMFW ANQMQEIEHA SDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEI FVLELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGVTKATI PFVGSPTDMP YYYVPQHPVG HAGMTMGKPV DQAALYPGQQ  240
PRPPVAFVPW PHGQPQPPQP QQSEQQQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5693185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606593.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_017606595.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0B0P2A30.0A0A0B0P2A3_GOSAR; Nuclear transcription factor Y subunit C-2-like protein
STRINGGorai.007G336800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-81nuclear factor Y, subunit C2