PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32033_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 313aa    MW: 35636.4 Da    PI: 5.2898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32033_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20120169255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Cotton_A_32033_BGI-A2_v1.0 120 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 169
                                 8********.**********965...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30120177IPR001471AP2/ERF domain
CDDcd000188.86E-34120176No hitNo description
SMARTSM003807.3E-36120183IPR001471AP2/ERF domain
PfamPF008473.8E-14120169IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21120176IPR016177DNA-binding domain
PROSITE profilePS5103223.591120177IPR001471AP2/ERF domain
PRINTSPR003676.5E-11121132IPR001471AP2/ERF domain
PRINTSPR003676.5E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNPGRVKYTE RRTVTNKLLK ASSKWFPMES KPKAPRIVRI SVTDGDATDS SSDESEQERH  60
HTVKRHVSEI RIGDCSTFNS NKTSNKQNRP TNNKTNLVNI RSKKQQPQQQ QQQCLSNGVK  120
YRGVRQRPWG RWAAEIRDPT SRTRVWLGTY DTAEEAALVY DRAAIRIKGP DALTNFIKPP  180
ARPSPPEIEL EMTSGYDSGQ ESHSLCSPTS VLRFQSNEET ELQTESKDDS TTQTGWSPVK  240
ELSQYPSNLL DEFLLTDPVV LYDYLDSDNP TPIFFDELSL PEASSNLEHD YCDISVKLDV  300
DFGSCSWDVD NYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22116176162ATERF1
3gcc_A4e-22116176162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614617.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A1U8NXE30.0A0A1U8NXE3_GOSHI; ethylene-responsive transcription factor CRF5-like
STRINGGorai.001G156900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.16e-55cytokinin response factor 5