PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31971_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 325aa MW: 36033.8 Da PI: 6.1781 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.9 | 1.3e-28 | 55 | 146 | 3 | 73 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl++ k i++l+ + Cotton_A_31971_BGI-A2_v1.0 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGVGQPSKVVDWLLEATKDDIDKLPPLqmplgfnqfhqpllvphepn 137 79************************************************************988888887777777754433 PP TCP 66 .ssssa...sec 73 + +++ Cotton_A_31971_BGI-A2_v1.0 138 pP---FldpNSM 146 31...1222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.038 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-25 | 56 | 119 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MISSSREAKQ EGETNDGSGG GNKLSKGPSS SSSSRHWSSA GFRNPRIVRV SRSFGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AIQLYDLQER LGVGQPSKVV DWLLEATKDD IDKLPPLQMP 120 LGFNQFHQPL LVPHEPNPPF LDPNSMLMKD GEEEDQRMAG DRDKGKWIKM NEDENHGGNN 180 NNNIEDQRLF PLTNHSPFPG LLNNGMPLNS YYHWEPSSLS LSQFGNHGLM APQTENFFNG 240 NATSVPLPCS TTVPSATMAS FFPTYPPYGT NPGSNDSRQM NYLQLLSSSF LSNSMKPFSL 300 NVNAGLTHTQ NDDENHGDDQ DNTDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628892.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
Refseq | XP_017628896.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
Swissprot | Q9FME3 | 4e-57 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | A0A1U8NS25 | 0.0 | A0A1U8NS25_GOSHI; transcription factor TCP17-like | ||||
STRING | Gorai.008G199700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 8e-54 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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