PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31838_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 237aa    MW: 26067.9 Da    PI: 7.9655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31838_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1866116256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr ++ rg+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Cotton_A_31838_BGI-A2_v1.0  66 IYRGVRIRS-RGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 116
                                 69****988.8*********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1265116IPR001471AP2/ERF domain
CDDcd000189.69E-3065123No hitNo description
SuperFamilySSF541711.31E-2066124IPR016177DNA-binding domain
PROSITE profilePS5103221.81266123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3066124IPR001471AP2/ERF domain
SMARTSM003804.7E-3566129IPR001471AP2/ERF domain
PRINTSPR003673.1E-86778IPR001471AP2/ERF domain
PRINTSPR003673.1E-889105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSSTAFTSTS SCTGFSFPGS RKNKKTSKTS VSPQESKKAG DYSEDNGNGK KKRGMISEDG  60
GSKHPIYRGV RIRSRGKWVS EIREPRKKSR IWLGTYSTAE MAARAHDVAA LAIKGHKAYL  120
NFPQLAKELP RPASTSPKDI QAAASQAASS TFLETRRCTV EDEAGPNQEE IPVSHSSLTS  180
AASDNLQESS TSLFTHDDDT LFDLPDLMID CSYSSAWQIC AVDGVFRTEE LFVWDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1561124973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631642.11e-178PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ74e-56ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8PBC51e-152A0A1U8PBC5_GOSHI; ethylene-responsive transcription factor ERF038-like
STRINGGorai.001G176500.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]