PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_31811_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31099.1 Da PI: 8.6663 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.8e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed llv++++ + g+W++ + + g+ R++k+c++rw +yl Cotton_A_31811_BGI-A2_v1.0 14 KGPWTSREDTLLVNYIQAHDEGHWRSLPMKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w++ Cotton_A_31811_BGI-A2_v1.0 67 RGNISPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.278 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.75E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.437 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MGRSPCCSKV GLHKGPWTSR EDTLLVNYIQ AHDEGHWRSL PMKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI SPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRLLSQG 120 IDPNTHQTLP KPVVQQVKKK NNNRGSNNKQ NPKKANATHE PAVIPKLHLP KPSRITTAFL 180 PRNDSFDQCT RFSTVSSSQR GEGALDTEAI KCPWSEYVND GENGTGLLSD LECHSGLPAS 240 GDKNSLEKLY EEYLQLLRTD EDQLQLDDFA ESFLI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625585.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9S9K9 | 4e-68 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A1U8MWA8 | 0.0 | A0A1U8MWA8_GOSHI; myb-related protein 308-like | ||||
TrEMBL | A0A2P5WM53 | 0.0 | A0A2P5WM53_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G151000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-69 | myb domain protein 3 |