PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31540_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 134aa    MW: 15353.4 Da    PI: 10.3206
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31540_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.73.5e-11112132121
                                 ---SS-EEEEEEE--TT-SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                                 ldDgy+WrKYGqK vk+++fp
  Cotton_A_31540_BGI-A2_v1.0 112 LDDGYRWRKYGQKAVKNNKFP 132
                                 59******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-1297132IPR003657WRKY domain
SuperFamilySSF1182901.83E-9104133IPR003657WRKY domain
PROSITE profilePS5081113107134IPR003657WRKY domain
PfamPF031064.0E-7113133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MENKYQMFFP ISSPASSAAY DPLTTNIMAP TNPHVFNNFH GNSPNGLMDL KTDQKFIKKA  60
AEVKEPVDQN GRFVGSKTDY HLKSSAATDK KKEKMIRKPR YAFQTRSEVD ILDDGYRWRK  120
YGQKAVKNNK FPSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698460.0KF669846.1 Gossypium hirsutum WRKY transcription factor 99 (WRKY99) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752853.14e-95PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A1U8PR889e-94A0A1U8PR88_GOSHI; probable WRKY transcription factor 75
TrEMBLA0A2P5VTF79e-94A0A2P5VTF7_GOSBA; Uncharacterized protein
STRINGGorai.012G085100.13e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-19WRKY DNA-binding protein 75