PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31522_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 44237.1 Da PI: 6.5059 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.1 | 4.9e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++ Cotton_A_31522_BGI-A2_v1.0 15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIQEVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAA 96 69****************************.9***************964443122456************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Cotton_A_31522_BGI-A2_v1.0 97 GFWKATGRDKIIYS-GFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 143 **************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-57 | 10 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.47 | 15 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSEDMNLSIN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIQEV DLNKLEPWDI 60 QEKCRIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKIIYS GFRRIGLRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNTTTH DSNGSNPIGD SVTEDGWVVC RVFRKKNYLK 180 TLESPKSNSS STGHDLKTHM LSSGGNDGVL DQILHYMGRT CKMESDSLNN INNMPIPNNN 240 PRMLVGNNAG INDGFHDHER FMHLPRLESP TLPSLCYQSI EDMLTETEHQ GGGCGGGGNN 300 ETKNGVNDWV TLDQLVASQL SGQVETSKQL SCFSDPNAVF SLCHDDGIQL SHLNLQRSNQ 360 SSQVYSNNDN DLWSLTRSSS SPSSSDPLCH LSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 10 | 177 | 10 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ921835 | 0.0 | GQ921835.1 Gossypium hirsutum NAC trascription factor 2 (nst2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629835.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-115 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2P5XAJ7 | 0.0 | A0A2P5XAJ7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G077700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-106 | NAC family protein |