PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31354_BGI-A2_v1.0
Common NameF383_31108
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 317aa    MW: 35731.2 Da    PI: 8.3863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31354_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-172673148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Cotton_A_31354_BGI-A2_v1.0 26 RGPWTPEEDEVLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 73
                                89******************************99************97 PP

2Myb_DNA-binding48.32.3e-1579124148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_31354_BGI-A2_v1.0  79 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124
                                 678889****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-221775IPR009057Homeodomain-like
PROSITE profilePS5129415.7082173IPR017930Myb domain
SuperFamilySSF466891.39E-2823120IPR009057Homeodomain-like
SMARTSM007172.9E-122575IPR001005SANT/Myb domain
PfamPF002496.7E-152673IPR001005SANT/Myb domain
CDDcd001671.95E-92873No hitNo description
PROSITE profilePS5129424.57874128IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2476129IPR009057Homeodomain-like
SMARTSM007173.4E-1478126IPR001005SANT/Myb domain
PfamPF002497.2E-1480124IPR001005SANT/Myb domain
CDDcd001671.32E-1084124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKNPSLVGNS TSSKGTPCCS KVGIKRGPWT PEEDEVLANY IKREGEGRWR TLPKRAGLLR  60
CGKSCRLRWM NYLRPSVKRG RIAPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW  120
NTHLSKKLIS QGIDPRTHKP LNLITHKSPQ INHDHVPKSN PSPPIPNPSV LASKTITIKT  180
TNTTKDGTPT NLEHGYQQQS QNQQVDKSME KWKNTESATL IMAEPSSHGN EGDHMENCNE  240
DMFSSFLDSL INENLLVNQH PEEQQPNNLV APAAAAAESS QNLCHGDMWE TELISAMVGF  300
GNEPNSFNNH YHYLHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24261287108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629604.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388505e-83MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0B0MZE70.0A0A0B0MZE7_GOSAR; Transcription repressor MYB5-like protein
STRINGGorai.007G260600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-81myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]