PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31306_BGI-A2_v1.0

Common Name

F383_03944

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 27494.1 Da PI: 8.8588

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31306_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Cotton_A_31306_BGI-A2_v1.0 99 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 153 788899***********************************************98 PP
2	HD-ZIP_I/II	125.1	3.2e-40	99	188	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rl+k+q++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke Cotton_A_31306_BGI-A2_v1.0 99 RKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKE 181 69******************************************************************************* PP HD-ZIP_I/II 84 veeLreel 91 +eL+ +l Cotton_A_31306_BGI-A2_v1.0 182 LQELK-AL 188 **9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.329	95	155	IPR001356	Homeobox domain
SMART	SM00389	6.2E-16	97	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-18	97	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-18	99	153	IPR009057	Homeodomain-like
CDD	cd00086	7.95E-17	99	156	No hit	No description
Pfam	PF00046	1.5E-16	99	153	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
SMART	SM00340	5.7E-26	155	198	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-10	155	189	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSMAAASFEP SLTLGLSGQI YIVNDNNKKI DVNKGGGYLH NHEEPGSGDL YRQASPHSAV 60 SSFSSGRVKR ERDLSCEEVE VEKNSSRVSE EDEDGVNARK KLRLTKDQSA LLEESFKQHS 120 TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLQK 180 ELQELKALKL AQPFYMHMPA ATLTMCPSCE RIGGVSDGSS KNPFSVLPSK PHFYNRFTNP 240 SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM134793	0.0	HM134793.1 Gossypium hirsutum homeodomain-leucine zipper protein HD4 (HB4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629599.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Refseq	XP_017629615.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	6e-95	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0B0PM63	0.0	A0A0B0PM63_GOSAR; Homeobox-leucine zipper HAT22-like protein
STRING	Gorai.007G228000.1	1e-176	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-84	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]