PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31245_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 225aa    MW: 24569.7 Da    PI: 4.5279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31245_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-193787155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Cotton_A_31245_BGI-A2_v1.0 37 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 87
                                89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-113787IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-203796IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-293896IPR001471AP2/ERF domain
SMARTSM003809.0E-3338101IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313895IPR001471AP2/ERF domain
CDDcd000187.55E-293897No hitNo description
PRINTSPR003675.5E-93950IPR001471AP2/ERF domain
PRINTSPR003675.5E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKPICTTHS SASQTEYASD INTNSCSSNS SSSSSSSKYK GVRKRKWGKW VSEIRLPNSR  60
ERIWLGSYDS PEKAARAFDA ALYCLRGRDA KFNFPENPPE IAGGTSFSPP EIQVVAARFA  120
KGVELETPGN NNSILGTEEY TSSSSGGGAT TQVESRHHEE DMMDWSFLSM LDNNNTNDGG  180
MSDYGFYSNL GHLPGGDDDQ LYPPPIDDDE NGGSAFSPSS FLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1534951072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801850.0KP780185.1 Gossypium hirsutum C-repeat binding factor 2 (CBF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641230.11e-167PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-51ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A141AX431e-165A0A141AX43_GOSHI; C-repeat binding factor 2
STRINGEOY300938e-72(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]