PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31166_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 336aa    MW: 36408.5 Da    PI: 8.8332
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31166_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.29.9e-403492361
                      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                                ++alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk 
  Cotton_A_31166_BGI-A2_v1.0 34 QAALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKL 92
                                6789****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-261986IPR003851Zinc finger, Dof-type
PfamPF027012.8E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSPDNPSVKP AAKDENQSSG NRKTGSTRAA QDQQAALKCP RCDSPNTKFC YYNNYSLTQP  60
RHFCKTCRRY WTKGGALRNV PIGGGCRKNK KLKPSSRLSS DSKDSISSSE MGGGLKFFHG  120
LSPAMDFQLG GLSLPRLKPS PPAIYNQFAS FGDTDTPPPT SFTLDPSGSS TSLMGFNNYP  180
LSSLTPGLSG AIQEMGSLNV SSGLASSIES LSSINQDLHW KLQQQRLAML FGGGGENQKE  240
NTITTTACSV PVENQPQKLQ PILFHNLEIS KPEISSVENP RKATTNETAT EWFFGNSYAP  300
VTPTPTTSSN GNDNTTTSNW NGVQAWNDLH HYNTLP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-46AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636399.10.0PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A1U8LHM30.0A0A1U8LHM3_GOSHI; dof zinc finger protein DOF5.7-like
STRINGGorai.008G094000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-61Dof family protein