PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30927_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 808aa    MW: 90018.5 Da    PI: 5.099
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30927_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.49.9e-1204348041373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL+ cA+av+++d + a++l++++++++sp gd mqR+a+yf  +L+arla+s++++y al +++ts    +++l+a++l
  Cotton_A_30927_BGI-A2_v1.0 434 LRTLLTLCAQAVAADDRRSANELIKQIRQHSSPMGDGMQRIAHYFIDGLEARLAGSGTQIYTALITKPTS---AADVLKAHHL 513
                                 5789**************************************************************9999...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 f  ++P+ k+s++  N++I++ +e + r+HiiDf+i +G+QWp+L++ L+sRp+gpp+lRiTg++ p++g   +e++eetg+r
  Cotton_A_30927_BGI-A2_v1.0 514 FLAACPFKKLSNFFSNKTIMNLAEDAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRR 596
                                 *********************************************************************9************* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 La++Ae+++vpfef++ +a++++++++e+L ++++E+l+Vn++++l +llde+v +es+r++vL+l+++++P+v+++   +  
  Cotton_A_30927_BGI-A2_v1.0 597 LANYAETFKVPFEFHA-IAQKWDTIQIEDLGIDRDEVLVVNCMYRLRNLLDETVIVESPRNKVLNLIRKMNPDVFILGIVNGA 678
                                 ****************.7***************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 ++++ F +rf eal ++s+lfd+le+++pre  er+ +Ere++g+e++nv+acegaer+er et+++W++r ++aG++++pl+
  Cotton_A_30927_BGI-A2_v1.0 679 YSAPFFITRFREALFHFSTLFDMLETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQMRNTRAGLRQLPLN 761
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +++++ ak  + + + + + ++e++ +l++gWk+r ++++S W
  Cotton_A_30927_BGI-A2_v1.0 762 KEIMQIAKERVDTGYHKDFVIDEDNRWLLQGWKGRIVYALSTW 804
                                 *************99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.648408785IPR005202Transcription factor GRAS
PfamPF035143.4E-117434804IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MDGWLKGSNS FVDRVGLNDG TVLALSGRDF DNRFKNEKCV DIPSSEPVMI PGNSGNVVSS  60
LGTCSDRVGL NDGTVLALSG RDFASQFKNE NYVDVLPLEH VMVPGNLVPS FGTCSDIVGL  120
NVDNQPVPIP GNSVPSSSVN EGDLHEDFDF SDEVLKYISQ MLMEEDMEDK TCMFKESSAA  180
LQAAEKAFYE VLGERYPPSP EYDGDQNQES SDESHGQNCW GCSSASISSG SVVDPGHNHD  240
FSEQRALNFP SQASSSHSSG NSTGSVVDGY ADSPVSTVRL LEIFNNSESA IQFRKGFEEA  300
SKFLPNGGSL FVHGENDGLF LKELKEETKD VAVDKVDKDE ISRDGSRGKK KPYPEDLSLE  360
CGRSTKQSLV YTESAVSPEM FDMVLLNCQS VTELQKVLQD ETSKNVQQNG QLKGSNGGKA  420
RGKKHGGKRN MVDLRTLLTL CAQAVAADDR RSANELIKQI RQHSSPMGDG MQRIAHYFID  480
GLEARLAGSG TQIYTALITK PTSAADVLKA HHLFLAACPF KKLSNFFSNK TIMNLAEDAA  540
RLHIIDFGIL YGFQWPCLIR RLSSRPGGPP KLRITGIDLP QPGFRPAERV EETGRRLANY  600
AETFKVPFEF HAIAQKWDTI QIEDLGIDRD EVLVVNCMYR LRNLLDETVI VESPRNKVLN  660
LIRKMNPDVF ILGIVNGAYS APFFITRFRE ALFHFSTLFD MLETNVPREI PERMLIEREI  720
FGWEAMNVIA CEGAERIERP ETYKQWQMRN TRAGLRQLPL NKEIMQIAKE RVDTGYHKDF  780
VIDEDNRWLL QGWKGRIVYA LSTWVPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5044180625379Protein SCARECROW
5b3h_D1e-5044180625379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649093.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2P5Y7X20.0A0A2P5Y7X2_GOSBA; Uncharacterized protein
STRINGGorai.011G266200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein