PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30915_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 217aa    MW: 24163.3 Da    PI: 4.435
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30915_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.9e-397106199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                                 +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ +++yeA ar+rdP+yG+v++i++
  Cotton_A_30915_BGI-A2_v1.0   7 SCGACKFLRRKCTNECVFAPYFCYDEaANHFAAVHKVFGASNVSKLLLHLPIHNRSDAAITIAYEALARIRDPIYGCVAHIFA 89 
                                 6***********************9878******************************************************* PP

                      DUF260  83 lqqqleqlkaelallke 99 
                                 lqqq++ l++e+++l +
  Cotton_A_30915_BGI-A2_v1.0  90 LQQQVAGLQEEIETLIN 106
                                 ***********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6596108IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-377103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTN ECVFAPYFCY DEAANHFAAV HKVFGASNVS KLLLHLPIHN  60
RSDAAITIAY EALARIRDPI YGCVAHIFAL QQQVAGLQEE IETLINQMAN HAVEVPIEAV  120
QFGSIDETMN TLYYQDEQAT LLNLQGSITG NQVVHSQLCE EDSAQHSFKW VEDSKFLSNI  180
HEDPYEISFE GLEFGDLIDY PCMGNTGIPS NWEIPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3631127115LOB family transfactor Ramosa2.1
5ly0_B1e-3631127115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648024.11e-163PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS82e-55LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0D2UYI01e-159A0A0D2UYI0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LR781e-159A0A1U8LR78_GOSHI; LOB domain-containing protein 33-like
STRINGGorai.011G267700.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.19e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]