PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30832_BGI-A2_v1.0
Common NameF383_28371
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 425aa    MW: 47417.2 Da    PI: 5.7843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30832_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.2e-15217264254
                                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  ++h + Er RR ++N++f+ Lr+++P++     +K++ a+i+  A++YIk+L
  Cotton_A_30832_BGI-A2_v1.0 217 TTKHFATERERRVHLNDKFQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 264
                                 579**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15215283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-12216269No hitNo description
Gene3DG3DSA:4.10.280.103.4E-14218273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12218264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNLQESGCFD PQYSMTHWHA LMVMGGLSSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA  60
STAVQMEIQQ HHLLDTTTTN SHFIPPELSY EQSNQDAADH QSFNMLLSSS SPKAAYPPTP  120
DLLNLFHLPP KCSFLPNSSI SFESASASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL  180
PADEKELYHD GDNGILEFTR DISMVAHSKG RDKAGKTTKH FATERERRVH LNDKFQALRT  240
MVPSPTKNDR ASIVGDAIDY IKELLRTVRE LKLVVEKKRC GQDRSKRLKT EETATAADAG  300
DGECKLLGLG DPDQCYNTCL RSSWLQRKSK NSEVDVRVID DEVTIKLVQR KKINCLLFVS  360
RLLDELQLDL HHVAGGNIGD YYSFLFNTKI YEGSSVYASA IANNLINVVD KQDAAAAPPT  420
SSTCL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614871.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0B0PFC00.0A0A0B0PFC0_GOSAR; Transcription factor bHLH91-like protein
STRINGGorai.012G081100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-94bHLH family protein