PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30654_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 758aa MW: 85549.7 Da PI: 4.9958

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30654_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	356.1	5.3e-109	381	755	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lL+ cA+avs++d + a++lL++++e++sp gd++qRla f+ +L+arl +s+ + ++ +++ ++ ++ l+a+k+ Cotton_A_30654_BGI-A2_v1.0 381 LRTLLILCAQAVSADDRRTASELLKQIKEHSSPLGDANQRLAYIFADGLEARLDGSGALIHVFYASLASKMTTAADILKAYKA 463 5789*************************************************777776666777777777****** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164 + +P+ k++ l aN+ I+ +e+ + +Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g +e++eetg+r Cotton_A_30654_BGI-A2_v1.0 464 YLCSCPFTKLAILFANKSIYHMAEKTSVLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIEIPQRGfrPAERIEETGRR 546 ****************************************************************99********* PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 Lak++e+++vpfe+n+++++++e++++e+++++++E+laVn+ ++ h+llde+++++ +r+++Lkl+++++P+++v++ + Cotton_A_30654_BGI-A2_v1.0 547 LAKYCERFNVPFEYNPIAVEHWETIQIEDIKIDSNEMLAVNSLFRFHNLLDETADVDCPRNAMLKLIRKMKPDIFVHSIVNGA 629 ******************************************************************************* PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 +n++ F++rf e l + sa+fd +e++lpre+ +r + Ere+ gre++nv+aceg++r++r et+++W+ r + GFkp+pl+ Cotton_A_30654_BGI-A2_v1.0 630 YNAPFFVTRFKEVLFHISAVFDVFENTLPREEPARLMFEREFYGREAMNVIACEGSARVQRPETYKQWQIRTLREGFKPLPLD 712 ******************************************************************************* PP GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ +k ++ l+ + + + ++e+++++++gWk+r L+ S+W Cotton_A_30654_BGI-A2_v1.0 713 QELMKIIRDKLKAWYHKDFVIDEDNHWMLQGWKGRILYGSSCW 755 ***********888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.834	355	736	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-106	381	755	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MDPNSIEISD YLNCFKVEDH TFHNGFEFNV PSPDLNFMNM NVPFIPLDSD PGINVPSITA 60 SSDGSPFSAS TGWSPLGESY SPPSDSDSTD PVLKYISQML MEENMEDKPY MFNDYLALED 120 TEKSLYDALV SNIIQPVKVE SPDCNLFGTN GHSDASISSR SGTSDHINPR GIGEVGGPDP 180 SLLRAPYSLQ PDLQQSSSQF SVDSVNSLSN IGNGLMESSV SELLVKNIFS DKESVLQFQR 240 GFEEASKFIP SSEQLVIDLE SSTFAVGKKV DVPKVVVKVE KDEREISSNG LTGRKNHERD 300 DWELEDERSN KQSATYTEES DLSEVFDKVL LCTEGKTMCG IDQTVQHGET DSSQHKEQLD 360 GSIVGRNRSK RRGKKKEVVD LRTLLILCAQ AVSADDRRTA SELLKQIKEH SSPLGDANQR 420 LAYIFADGLE ARLDGSGALI HVFYASLASK MTTAADILKA YKAYLCSCPF TKLAILFANK 480 SIYHMAEKTS VLHIVDFGIL YGFQWPILIQ HLSTRPGGPP KLRITGIEIP QRGFRPAERI 540 EETGRRLAKY CERFNVPFEY NPIAVEHWET IQIEDIKIDS NEMLAVNSLF RFHNLLDETA 600 DVDCPRNAML KLIRKMKPDI FVHSIVNGAY NAPFFVTRFK EVLFHISAVF DVFENTLPRE 660 EPARLMFERE FYGREAMNVI ACEGSARVQR PETYKQWQIR TLREGFKPLP LDQELMKIIR 720 DKLKAWYHKD FVIDEDNHWM LQGWKGRILY GSSCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MDPNSIEISD YLNCFKVEDH TFHNGFEFNV PSPDLNFMNM NVPFIPLDSD PGINVPSITA  60
SSDGSPFSAS TGWSPLGESY SPPSDSDSTD PVLKYISQML MEENMEDKPY MFNDYLALED  120
TEKSLYDALV SNIIQPVKVE SPDCNLFGTN GHSDASISSR SGTSDHINPR GIGEVGGPDP  180
SLLRAPYSLQ PDLQQSSSQF SVDSVNSLSN IGNGLMESSV SELLVKNIFS DKESVLQFQR  240
GFEEASKFIP SSEQLVIDLE SSTFAVGKKV DVPKVVVKVE KDEREISSNG LTGRKNHERD  300
DWELEDERSN KQSATYTEES DLSEVFDKVL LCTEGKTMCG IDQTVQHGET DSSQHKEQLD  360
GSIVGRNRSK RRGKKKEVVD LRTLLILCAQ AVSADDRRTA SELLKQIKEH SSPLGDANQR  420
LAYIFADGLE ARLDGSGALI HVFYASLASK MTTAADILKA YKAYLCSCPF TKLAILFANK  480
SIYHMAEKTS VLHIVDFGIL YGFQWPILIQ HLSTRPGGPP KLRITGIEIP QRGFRPAERI  540
EETGRRLAKY CERFNVPFEY NPIAVEHWET IQIEDIKIDS NEMLAVNSLF RFHNLLDETA  600
DVDCPRNAML KLIRKMKPDI FVHSIVNGAY NAPFFVTRFK EVLFHISAVF DVFENTLPRE  660
EPARLMFERE FYGREAMNVI ACEGSARVQR PETYKQWQIR TLREGFKPLP LDQELMKIIR  720
DKLKAWYHKD FVIDEDNHWM LQGWKGRILY GSSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-45	370	757	7	379	Protein SCARECROW
5b3h_D	4e-45	370	757	7	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	370	RNRSKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639189.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5W8M7	0.0	A0A2P5W8M7_GOSBA; Uncharacterized protein
STRING	Gorai.003G130500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]