PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30653_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 627aa MW: 71211 Da PI: 6.6731

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30653_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395.4	5.8e-121	254	623	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lL++cA+av+ +d++ a++lL+++s+++s +gd +qRla+yf+ AL++rla+++ y+ l +++ts ++ l+a+++++ Cotton_A_30653_BGI-A2_v1.0 254 SLLTQCAQAVTINDQRTANELLKQISQNSSTTGDGTQRLAHYFADALKTRLAGMGAPSYSPLVSNRTS---AADILKAYRVLV 333 79*******************************************************999988888...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++P+ k+ h+ aN+ I++ +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL+ Cotton_A_30653_BGI-A2_v1.0 334 LACPFKKMMHFYANKKIMKVAEKATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLK 416 ***************************************************************9*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 +++e+++vpfe+nv +ak++e+++leeL++k++E+++Vn++++l++l+d+++s++s+rd vLkl++s++P+ +++ ++ +n Cotton_A_30653_BGI-A2_v1.0 417 RYCEKFKVPFEYNV-IAKKWETIQLEELKIKKDEVVVVNCMYRLKNLPDDTLSSTSARDIVLKLIRSINPEFFIHGISNGTYN 498 *********9.7*************************************************************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 ++ F++rf eal ++sa+fd +ea++pr++ +r++ Ere++gr+i+nvvaceg er+er et+++W++r +aGFk++pl+++ Cotton_A_30653_BGI-A2_v1.0 499 APFFVTRFREALFHFSAMFDIFEANVPRDDPQRMMFEREVIGRDIMNVVACEGIERVERPETYKQWQARTLRAGFKQIPLDQD 581 ******************************************************************************* PP GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k++ +++ + + + ++ + ++++gWk+r ++++S+W+ Cotton_A_30653_BGI-A2_v1.0 582 LVKKVTNMVQSNYHRDFIIDVDGRWMLQGWKGRVIFALSCWK 623 *********999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.724	226	603	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-118	254	623	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MYAFKFDHGA VPVYSNHDFV NNNNGFIKDS PPQVVPSPDS PVESWTTTNS EAHPLDNIPF 60 ANEMLKYINE MLMEEDMEEK TCMLQDCLAL QAAEKSFYEV LGHEYPLSTD PIPAYTDQTG 120 GNPGDFDSSL IQTSLVDSLE RTSLFPDLQR GIPPSIEPSG SSLLGSKGRK NYERGDVDDL 180 EQGRSNKQSA VSLEDSEQTD MFDDILLCKG ENEDDPRCSL NESSQRLWPQ KGTSKGGTAR 240 RKNGKKSEVV DLWSLLTQCA QAVTINDQRT ANELLKQISQ NSSTTGDGTQ RLAHYFADAL 300 KTRLAGMGAP SYSPLVSNRT SAADILKAYR VLVLACPFKK MMHFYANKKI MKVAEKATTL 360 HIVDFGICYG FQWPCLIQRL SARAGGPPKL RITGIEFPQP GFRPAERVEE TGRRLKRYCE 420 KFKVPFEYNV IAKKWETIQL EELKIKKDEV VVVNCMYRLK NLPDDTLSST SARDIVLKLI 480 RSINPEFFIH GISNGTYNAP FFVTRFREAL FHFSAMFDIF EANVPRDDPQ RMMFEREVIG 540 RDIMNVVACE GIERVERPET YKQWQARTLR AGFKQIPLDQ DLVKKVTNMV QSNYHRDFII 600 DVDGRWMLQG WKGRVIFALS CWKPVKN

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MYAFKFDHGA VPVYSNHDFV NNNNGFIKDS PPQVVPSPDS PVESWTTTNS EAHPLDNIPF  60
ANEMLKYINE MLMEEDMEEK TCMLQDCLAL QAAEKSFYEV LGHEYPLSTD PIPAYTDQTG  120
GNPGDFDSSL IQTSLVDSLE RTSLFPDLQR GIPPSIEPSG SSLLGSKGRK NYERGDVDDL  180
EQGRSNKQSA VSLEDSEQTD MFDDILLCKG ENEDDPRCSL NESSQRLWPQ KGTSKGGTAR  240
RKNGKKSEVV DLWSLLTQCA QAVTINDQRT ANELLKQISQ NSSTTGDGTQ RLAHYFADAL  300
KTRLAGMGAP SYSPLVSNRT SAADILKAYR VLVLACPFKK MMHFYANKKI MKVAEKATTL  360
HIVDFGICYG FQWPCLIQRL SARAGGPPKL RITGIEFPQP GFRPAERVEE TGRRLKRYCE  420
KFKVPFEYNV IAKKWETIQL EELKIKKDEV VVVNCMYRLK NLPDDTLSST SARDIVLKLI  480
RSINPEFFIH GISNGTYNAP FFVTRFREAL FHFSAMFDIF EANVPRDDPQ RMMFEREVIG  540
RDIMNVVACE GIERVERPET YKQWQARTLR AGFKQIPLDQ DLVKKVTNMV QSNYHRDFII  600
DVDGRWMLQG WKGRVIFALS CWKPVKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-53	256	623	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641909.1	0.0	PREDICTED: scarecrow-like protein 30
Swissprot	P0C883	0.0	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A1U8HGK2	0.0	A0A1U8HGK2_GOSHI; scarecrow-like protein 30
STRING	Gorai.003G130400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein