PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30610_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 326aa    MW: 35781.5 Da    PI: 8.0412
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30610_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.32.1e-3460115458
                 ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                 v YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Cotton_A_30610_BGI-A2_v1.0  60 VSYKECLKNHAATLGGHALDGCGEFMPSPSATpSDPTSLKCAACGCHRNFHRRESD 115
                                 89*****************************99********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.6E-2960114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1760116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3062113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13762113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.88E-19200270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-30202271IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-26209266IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEIAPTSTPP LSTTTPKSPD PETETPVRIH PAKPKSFTNG VLKRHQPHHH YLHHAPPIVV  60
SYKECLKNHA ATLGGHALDG CGEFMPSPSA TPSDPTSLKC AACGCHRNFH RRESDDPPPT  120
TTATATIEYQ PHHRHHPPPP ASQAPHRSPN SASPPPISSS YYPSAPHMLL ALSGGLAGAL  180
DNNHHQNNSH LQGLGTLTPN TTNLGSHSKK RFRTKFTQFQ KDKMLEFAEK VGWKIQKRDE  240
QAIQEFCSEV GVDRGVLKVW MHNNKNTFGK KDQAINEGET GNNNNTENGL SHEDHHHHNN  300
NNGQNLNHHF ETDSVVHVGI NGSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-232082671675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607989.10.0PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-78ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1U8HQE40.0A0A1U8HQE4_GOSHI; zinc-finger homeodomain protein 9-like
STRINGGorai.006G017200.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-34homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]