PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30603_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 386aa MW: 43410.9 Da PI: 7.6967

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30603_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.9e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 + pGfrFhPtdeelv +yLkkk+++++l++ e ik+vdiyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+W Cotton_A_30603_BGI-A2_v1.0 14 MLPGFRFHPTDEELVGFYLKKKIQQRPLPI-ELIKQVDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTGAGFW 95 579*************************.89***********8888899************************ PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d++++s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl Cotton_A_30603_BGI-A2_v1.0 96 KATGTDRPIYSSdGAKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 141 *******955566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.28	14	173	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDEKNDVDKV DDVMLPGFRF HPTDEELVGF YLKKKIQQRP LPIELIKQVD IYKYEPWDLP 60 KLAASGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGA KCIGLKKSLV 120 FYRGRAAKGM KTDWMMHEFR LPSMSDSIPP SKKLFDKTLP ANDAWAICRI FKKTSTMAQR 180 ALSHTWISSL NHGAACSQFS SENISCTTEI GSTIPLCSNG ELQQDCSAGF SALDIPSYKS 240 FHQTVYRPSS FHVSNGDLHN NMMFSPLDNM SGSSPKCTID TSSMLLSRPL ISNASASTDF 300 RGQQHQYGDF SISSPQDMQG NGGGVESEEG TRKTSDSIPD YNHLLMGFPF RLSPNMPDSW 360 KPNLPWDSPQ CPSEMSTTYS TDKCYT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDEKNDVDKV DDVMLPGFRF HPTDEELVGF YLKKKIQQRP LPIELIKQVD IYKYEPWDLP  60
KLAASGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGA KCIGLKKSLV  120
FYRGRAAKGM KTDWMMHEFR LPSMSDSIPP SKKLFDKTLP ANDAWAICRI FKKTSTMAQR  180
ALSHTWISSL NHGAACSQFS SENISCTTEI GSTIPLCSNG ELQQDCSAGF SALDIPSYKS  240
FHQTVYRPSS FHVSNGDLHN NMMFSPLDNM SGSSPKCTID TSSMLLSRPL ISNASASTDF  300
RGQQHQYGDF SISSPQDMQG NGGGVESEEG TRKTSDSIPD YNHLLMGFPF RLSPNMPDSW  360
KPNLPWDSPQ CPSEMSTTYS TDKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
4dul_A	4e-52	16	176	19	168	NAC domain-containing protein 19
4dul_B	4e-52	16	176	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847203	0.0	KC847203.1 Gossypium hirsutum NAC domain protein NAC26 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017607875.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U8HY03	0.0	A0A1U8HY03_GOSHI; protein FEZ-like
TrEMBL	A0A2P5YET2	0.0	A0A2P5YET2_GOSBA; Uncharacterized protein
STRING	Gorai.006G017700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-100	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]