PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30531_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 288aa    MW: 31046.5 Da    PI: 6.863
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30531_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16198234135
                        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Cotton_A_30531_BGI-A2_v1.0 198 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKGT 234
                                 *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.1E-966101IPR010399Tify domain
PROSITE profilePS5132013.04366101IPR010399Tify domain
PfamPF062003.1E-1069100IPR010399Tify domain
PROSITE profilePS5101712.531133175IPR010402CCT domain
PfamPF062034.3E-16133175IPR010402CCT domain
SMARTSM004013.5E-16192245IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11196243No hitNo description
CDDcd002028.05E-16197244No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15197238IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440198225IPR000679Zinc finger, GATA-type
PfamPF003201.7E-14198234IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.671198251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MYGQSQPMNI PASIADNDVS ASAPANNHQS VSYDAHSLDD GVGVDDVSAD PLYVTSTPSD  60
LAIVQRVDGA SQLTLSFRGQ VYVFDAITPE KFHAVLLLLG GSELTSGPHG VEMSAQNQRV  120
VLDFPRGSNQ PHRAASLDRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG QFTSAKKSEG  180
AHSWGSSQED DNLADGICTH CGISSKSTPM MRRGPSGPRS LCNACGLFWA NKGTLRDIPK  240
KTQDLSLVPV QQGECETNDS NSGTAIPTTQ SNVVSFSNGD GSALIAEN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634894.10.0PREDICTED: GATA transcription factor 25 isoform X1
SwissprotQ9LRH61e-80GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1C8V7B70.0A0A1C8V7B7_GOSAR; ZML1 (Fragment)
STRINGGorai.005G097100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]