PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30469_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 267aa    MW: 29786.4 Da    PI: 5.4725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30469_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183281255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++ GVr+++ +g+WvAeI+d ++   + r +lg+f+tae+Aaka+++a+  l+g
  Cotton_A_30469_BGI-A2_v1.0 32 KFVGVRQRP-SGKWVAEIKDTTK---NIRMWLGTFDTAEDAAKAYDEAACLLRG 81
                                799******.7*********443...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-273289IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-193289IPR016177DNA-binding domain
SMARTSM003809.5E-353295IPR001471AP2/ERF domain
PROSITE profilePS5103219.483289IPR001471AP2/ERF domain
PfamPF008472.2E-123281IPR001471AP2/ERF domain
CDDcd000188.13E-313288No hitNo description
PRINTSPR003671.1E-73344IPR001471AP2/ERF domain
PRINTSPR003671.1E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEIQFQQQKS VIPVSKGSKF KGRNKKINKV NKFVGVRQRP SGKWVAEIKD TTKNIRMWLG  60
TFDTAEDAAK AYDEAACLLR GSDTRTNFVT HVSFDSPLAS RIRHLLNTKK EAKQQTVLAS  120
APTSFSLSPS PSCSITTSSG SCNSGGGLSN ENSSPVEMVQ DTQLFDDAYK PDMSNCTREL  180
ECASSQSDFS YICETGFNRF LYTQEIMNFP EETGSELTEF ERMKVERQIS ASLYAMNGVQ  240
ECIETVNESG EALWDLPPLC SLFSYKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-163388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630893.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY881e-96ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A1U8I7B60.0A0A1U8I7B6_GOSHI; ethylene-responsive transcription factor RAP2-11-like
STRINGGorai.007G260900.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16007712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-28related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]