PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30458_BGI-A2_v1.0

Common Name

F383_05259

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 986aa MW: 109945 Da PI: 5.8738

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30458_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.9	3.1e-56	14	128	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 e ++rwlk+ e++ iL+n+ek++l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyY Cotton_A_30458_BGI-A2_v1.0 14 EaQSRWLKPAEVLFILQNHEKYQLEQEPPHKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYY 96 5599***************************************************************************** PP CG-1 86 ahseenptfqrrcywlLeeelekivlvhylev 117 ah+e+np+fqrr+yw+L+ ++e+ivlvhy+e Cotton_A_30458_BGI-A2_v1.0 97 AHGEQNPSFQRRSYWMLDPAYEHIVLVHYREI 128 ***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.253	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.8E-76	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.7E-48	14	127	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.6E-18	422	506	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.5E-9	422	505	IPR002909	IPT domain
Gene3D	G3DSA:2.60.40.10	1.4E-8	422	503	IPR013783	Immunoglobulin-like fold
CDD	cd00102	2.61E-6	422	506	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-17	615	713	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.192	619	711	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.18E-17	622	713	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.87E-16	624	711	No hit	No description
Pfam	PF12796	7.0E-9	625	712	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.22	652	684	IPR002110	Ankyrin repeat
SMART	SM00248	5.2E-4	652	681	IPR002110	Ankyrin repeat
SMART	SM00015	26	769	791	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.62	770	799	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.9E-8	803	879	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.9	827	849	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	828	857	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.025	830	848	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.9E-4	850	872	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.011	851	875	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.8E-5	853	872	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MAQSGYDINN LFREAQSRWL KPAEVLFILQ NHEKYQLEQE PPHKPTSGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE QNPSFQRRSY WMLDPAYEHI 120 VLVHYREINE AKPCSASTVH SPLSNSASTP SPISYTSQNP GFNSLSSDVH ESYQNLPSPG 180 SAEVSSDIVI KNNGIDNTVE YPSPDDLQVV QALKRLEEQL SLNEDSVKEM SQFYCVDGDT 240 NDLEFQEYGR EITKQEQQAD LLYEPDNIFQ DHLYSQPARV ENYSNSSMLL PDGGKNGGHS 300 QVYGNDNSNG IHESQYWKSV FDSCKTQSAV NSKGKPLSSL RMRAAEQQEQ SHLLNFNGSS 360 IEASPVLLHQ EVGNVDIPAY SSAIESFDTK SDNYRMFFNQ EEIGIPLAAD SSLTITQKQK 420 FTIREISPEW GYSSEPTRVF IVGSFLCDPS ESAWACMFGE TEVPIEIIQE GVICCKAPPH 480 LPGKVTLCIT SANRESCSEI REFEYRVSSS SCTRCNVSHA EAPKSLEELL LLVRFVKMLL 540 TDSSSQKDSI DSGAHFSEKL KADDESWSHV IEALLIGSGT SSGTIDWLLQ ELLKDKLQQW 600 LSSRSKESGD QPGITMSKKE QGIIHMAAGL GFEWALNPIL NHGVSINFRD INGWTALHWA 660 ARFGREKMVA ALIASGASAG AVTDPTSQDP SGETPASIAA SSGHKGLAGY LSEVALMSHL 720 SSLTLEESEL SKGSAAVQAE IAVNSVSRGS LAINEDQLSL KDTLAAVRNA AQAAARIQNA 780 FRAHSFRKRQ QKEDADIAAS VDEYGISLGE IQNLSTMSKL AFGNARDYNS AALSIQKKFR 840 GWKGRKDFLA LRQKVVKIQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR KGVGLRGFRS 900 ESDCIDDEEE DILKVFRKQK VDVAIDEAVS RVLSMVDSPD ARQQYRRMLE KYRQAKAKLV 960 NTDEPTSSTS ITDVYDMESD DIFYIP

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MAQSGYDINN LFREAQSRWL KPAEVLFILQ NHEKYQLEQE PPHKPTSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYREINE AKPCSASTVH SPLSNSASTP SPISYTSQNP GFNSLSSDVH ESYQNLPSPG  180
SAEVSSDIVI KNNGIDNTVE YPSPDDLQVV QALKRLEEQL SLNEDSVKEM SQFYCVDGDT  240
NDLEFQEYGR EITKQEQQAD LLYEPDNIFQ DHLYSQPARV ENYSNSSMLL PDGGKNGGHS  300
QVYGNDNSNG IHESQYWKSV FDSCKTQSAV NSKGKPLSSL RMRAAEQQEQ SHLLNFNGSS  360
IEASPVLLHQ EVGNVDIPAY SSAIESFDTK SDNYRMFFNQ EEIGIPLAAD SSLTITQKQK  420
FTIREISPEW GYSSEPTRVF IVGSFLCDPS ESAWACMFGE TEVPIEIIQE GVICCKAPPH  480
LPGKVTLCIT SANRESCSEI REFEYRVSSS SCTRCNVSHA EAPKSLEELL LLVRFVKMLL  540
TDSSSQKDSI DSGAHFSEKL KADDESWSHV IEALLIGSGT SSGTIDWLLQ ELLKDKLQQW  600
LSSRSKESGD QPGITMSKKE QGIIHMAAGL GFEWALNPIL NHGVSINFRD INGWTALHWA  660
ARFGREKMVA ALIASGASAG AVTDPTSQDP SGETPASIAA SSGHKGLAGY LSEVALMSHL  720
SSLTLEESEL SKGSAAVQAE IAVNSVSRGS LAINEDQLSL KDTLAAVRNA AQAAARIQNA  780
FRAHSFRKRQ QKEDADIAAS VDEYGISLGE IQNLSTMSKL AFGNARDYNS AALSIQKKFR  840
GWKGRKDFLA LRQKVVKIQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR KGVGLRGFRS  900
ESDCIDDEEE DILKVFRKQK VDVAIDEAVS RVLSMVDSPD ARQQYRRMLE KYRQAKAKLV  960
NTDEPTSSTS ITDVYDMESD DIFYIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606460.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0B0N9I2	0.0	A0A0B0N9I2_GOSAR; Calmodulin-binding transcription activator 4-like protein
STRING	Gorai.009G332200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]