PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30410_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 408aa    MW: 45252.9 Da    PI: 9.1534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30410_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20242291356
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Cotton_A_30410_BGI-A2_v1.0 242 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 291
                                 8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-32240300No hitNo description
SMARTSM003802.8E-36241304IPR001471AP2/ERF domain
PROSITE profilePS5103222.682241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-32241299IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23241299IPR016177DNA-binding domain
PfamPF008476.5E-14242291IPR001471AP2/ERF domain
PRINTSPR003676.4E-11242253IPR001471AP2/ERF domain
PRINTSPR003676.4E-11264280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSVENQFPKT ETLMNKEWPS YIYGTPTGPI IWGALSKSPP SSSSSSPSPD RLNSSSSPEE  60
SLGANLLKNI PGILRQDILN EHHSSLFVSG FSSVPPHGGL VSEVKDGFMP LNFLETFPKL  120
NQAQVSEPPS PSTTSKFPNL TLFLQEPGML DPSRRSIGFM GKKGEPGSTL CQNPSFQMPQ  180
LGEVQSQMGD EWLRMNQSLT SYQSKGFSDY WLSTTKTQPM KYSGRRLQNQ HQKGSSSPGK  240
LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAMA YDTAAYMLRG EYAHLNFPDL  300
KHQLKANSLN GNTAALLEAK LQAISQGIAG NKKSNDPSLT SAKVQDLNKN TEKREWQFEV  360
KNKAGSEVNE ISKKTQESVS SDVDAVQLSR MPSLDMDMIW DALSVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20237298163ATERF1
3gcc_A8e-20237298163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644211.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2P5YPA50.0A0A2P5YPA5_GOSBA; Uncharacterized protein
STRINGGorai.011G157500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-69ERF family protein