PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_30404_BGI-A2_v1.0 | ||||||||
Common Name | F383_13889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35020.7 Da PI: 6.6577 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.1e-52 | 11 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+deelv++yL kkv++ ++ + + evd++k+ePwd+p+++ + kewyf+skrd+kyatg r+nrat sgyW Cotton_A_30404_BGI-A2_v1.0 11 LPPGFRFHPKDEELVCDYLMKKVASADT--LQLMIEVDLNKCEPWDIPETAGVGGKEWYFYSKRDRKYATGLRTNRATCSGYW 91 79**********************9983..35799*************9888899**************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd++++s kg +vg++ktLvfy+grapkg+k+dWvmhe+rl Cotton_A_30404_BGI-A2_v1.0 92 KATGKDRAIHS-KGMVVGMRKTLVFYNGRAPKGTKSDWVMHEFRL 135 ***********.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.614 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 12 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MSNISLVEAK LPPGFRFHPK DEELVCDYLM KKVASADTLQ LMIEVDLNKC EPWDIPETAG 60 VGGKEWYFYS KRDRKYATGL RTNRATCSGY WKATGKDRAI HSKGMVVGMR KTLVFYNGRA 120 PKGTKSDWVM HEFRLDGTLS PPNLSTLKED WVLCRVFHKT RDTITKPSSM GKTCLDDTSS 180 SSLPPLTDPY LISDQTGLNS DEQVPCFSVL SQTDPNSFKV DMQPNMPTKT LTSSSSVDHQ 240 QQQQMKPAAN DITSCLDSFP RDKMVIKAVL NNLTQLDTYL NVKESTSFDE GISSDQSYLS 300 GIWDCPTFGI NY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-56 | 6 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-56 | 6 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-56 | 6 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-56 | 6 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-56 | 6 | 159 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-56 | 6 | 159 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-56 | 6 | 159 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ393610 | 2e-99 | GQ393610.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0575 SSR marker CGR5622 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640681.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-108 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0B0PVN8 | 0.0 | A0A0B0PVN8_GOSAR; NAC domain-containing 21/22-like protein | ||||
STRING | Gorai.002G033100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-98 | NAC domain containing protein 1 |