PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30333_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32295.1 Da    PI: 6.4364
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30333_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-1886139356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Cotton_A_30333_BGI-A2_v1.0  86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139
                                 456899***********************************************9 PP
2HD-ZIP_I/II1291.9e-4185177193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+ +k++n++L+++
  Cotton_A_30333_BGI-A2_v1.0  85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYELIKADNDALQAH 167
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 +++L++e+++
  Cotton_A_30333_BGI-A2_v1.0 168 NKKLQAEIMA 177
                                 *****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-2064143IPR009057Homeodomain-like
PROSITE profilePS5007117.32981141IPR001356Homeobox domain
SMARTSM003891.8E-1784145IPR001356Homeobox domain
PfamPF000462.8E-1586139IPR001356Homeobox domain
CDDcd000867.80E-1686142No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1988148IPR009057Homeodomain-like
PRINTSPR000311.1E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5121137IPR000047Helix-turn-helix motif
PfamPF021836.6E-15141181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSCNGMAFFP ANFMLQTPHH DHEDHQRSTN SINQILPSCT APQEFHGVAS FLGKRSMSSY  60
SGIDHVCEEA NGEDDISDDG SQAGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDLL KRQYELIKAD NDALQAHNKK LQAEIMALKG  180
REASECINLN KETEGCSSNR SENSSDVKLD NDRPPPPAAT ISRPARTLFP TGLFQAASSN  240
SSHDDHHQPP QMVKEESLIT NMFCTIEEQT GFWPWLEQQQ HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5819655e-60JX581965.1 Gossypium hirsutum clone NBRI_GE14717 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016751783.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
RefseqXP_017603452.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-117ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1U8PN800.0A0A1U8PN80_GOSHI; homeobox-leucine zipper protein ATHB-13-like
TrEMBLA0A2P5XVD60.0A0A2P5XVD6_GOSBA; Uncharacterized protein
STRINGGorai.009G323600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-118HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]