PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_30233_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30092.8 Da PI: 4.6067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 36 | 84 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Cotton_A_30233_BGI-A2_v1.0 36 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 84 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.60E-30 | 34 | 91 | No hit | No description |
PROSITE profile | PS51032 | 20.336 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 35 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 36 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 36 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-12 | 38 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MDFNNSKTNS PSSSKNKRKQ QQKQPQQQQQ QQEARFLGVR RRPWGRYAAE IRDPSTKERH 60 WLGTFDTAEE AALAYDRAAR SMRGSKVRTN FVYSDMPVGS SVTSIISPDE SQHDMSSIFP 120 IHPPFHQQTD ANQDQLFFTQ DPFNACHFSS GWNQESSDTL VSYTPITGVM DAAGNGGSQQ 180 FSDDCELPPL PPDVSSTCYG SGVDMSYTYG SWSDTGLLGS ADGFDSGVGQ PFFDFNSYEL 240 MQHTPVFGKI PSVPDTVAEG FDLGSSSSGY FF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 36 | 91 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617571.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9FZ90 | 2e-48 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A1U8IJW0 | 0.0 | A0A1U8IJW0_GOSHI; ethylene-responsive transcription factor LEP-like | ||||
STRING | Gorai.005G197800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28160.1 | 1e-38 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|