PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30136_BGI-A2_v1.0 | ||||||||
Common Name | F383_03306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 284aa MW: 31599.6 Da PI: 5.8844 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.7 | 6.9e-37 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+y++++d+ ++++isw+eng+sfvv+++ +fak++Lp+yFkh+nf+SF+RQLn+YgF+kv ++ weF+++ Cotton_A_30136_BGI-A2_v1.0 10 FLTKTYQLVDDPITDNVISWNENGTSFVVWKTADFAKDLLPTYFKHNNFSSFIRQLNTYGFRKVVPDK---------WEFAND 83 9****************************************************************999.........****** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 +Fk+g+kell+ki r+k+ Cotton_A_30136_BGI-A2_v1.0 84 NFKRGEKELLSKISRRKT 101 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.0E-38 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-61 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-33 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.6E-21 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.2E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-21 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAQRSVPAPF LTKTYQLVDD PITDNVISWN ENGTSFVVWK TADFAKDLLP TYFKHNNFSS 60 FIRQLNTYGF RKVVPDKWEF ANDNFKRGEK ELLSKISRRK TVTSPPASAP EKGKTSGAAT 120 PSPTNSGEDL GSTSTSSPES KNPGSVETNQ FADLSEENEK LKRDKEMLSI ELAQAKRKCD 180 ELVAFLTECV KVEPDQINGI MRQGSCGSTI NGEDPGRICG VDDDEKTSEE DMGSLKLFGV 240 WLKGVEKKRA REETIMYGGP HAKEMKTVEF RHVPLVMESG KVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 5 | 104 | 16 | 125 | Heat shock factor protein 1 |
5d5u_B | 3e-26 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067416 | 0.0 | KR067416.1 Gossypium hirsutum HSF35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647437.1 | 0.0 | PREDICTED: heat shock factor protein HSF24-like | ||||
Swissprot | P22335 | 1e-109 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0B0PTB3 | 0.0 | A0A0B0PTB3_GOSAR; Heat shock factor HSF24 | ||||
STRING | Gorai.011G105700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 7e-96 | heat shock factor 4 |
Publications ? help Back to Top | |||
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