PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30135_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 372aa    MW: 40680.7 Da    PI: 7.8579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30135_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1865114255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +gr++AeIrdp++   + r +lg+f+taeeAa a++ a+++++g
  Cotton_A_30135_BGI-A2_v1.0  65 KYRGVRRRP-WGRYAAEIRDPKS---KERRWLGTFDTAEEAACAYDCAARAMRG 114
                                 8********.**********843...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.15565122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-3065121IPR001471AP2/ERF domain
CDDcd000181.26E-3065121No hitNo description
SuperFamilySSF541713.53E-2165122IPR016177DNA-binding domain
SMARTSM003802.3E-3365130IPR001471AP2/ERF domain
PfamPF008473.5E-1165114IPR001471AP2/ERF domain
PRINTSPR003672.1E-96677IPR001471AP2/ERF domain
PRINTSPR003672.1E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEEVFRRLNG IPHVPDPDPD PHPHPHSILN PIKCSASTTA VPTNTTTTSK KRFLKENGGP  60
GGTIKYRGVR RRPWGRYAAE IRDPKSKERR WLGTFDTAEE AACAYDCAAR AMRGMKARTN  120
FVYPATDPHS PNGPFLPPFN FSNPSQLSIR DLNHTRYQFG NCSNRPLFAK PPHSMVHHLP  180
FINGTSSSSL SSTFPIPSVL PATTFFNSSP SSSLWLSDNS SGPFTASTMT LPLKDKNSSV  240
TTVVPAPAIS TCQADDMGMG LFFPQGPSDS GLLEEIIQGF LPNPTSRNSG LVCSTTSNCT  300
QHSIVSPPTE MSFTGLNLKE IKNESLGFYM DYHPQLESLN GTANSRVVPN SNEIPLSHLQ  360
LGQDSMPDDI FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20651321476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635610.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1U8N4V50.0A0A1U8N4V5_GOSHI; ethylene-responsive transcription factor ESR2-like
STRINGGorai.008G161000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-30DORNROSCHEN-like