PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30115_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 34125.4 Da PI: 6.7654 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9.7e-39 | 29 | 89 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k+s+ Cotton_A_30115_BGI-A2_v1.0 29 HHQALKCPRCDSFNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 89 57899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 29 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-33 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.32 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQDIHLIEGG RLFNGGGDGG GGDRKLRAHH QALKCPRCDS FNTKFCYYNN YNLSQPRYFC 60 KNCRRYWTKG GVLRNVPVGG GCRKAKRSKT KPSSETTVSA TAVSALPHPE QQQQRQHQNS 120 DQRKADSHSN TESSSRNAAN CKVAVTNNNN NNSNSNNNSS SVGTTEAASA ITSCSTFYGN 180 PNNLGLEPGL LEQGSDGGIF AEIGSLTSLI TSPNNETLSF DFGTVLNRAG QWQPQQMTMS 240 MGGEEITKGL LDQTVQIEQS NLNIKLDSVF QPLDWEGNED QGLFGLPSTV DQTYWSQNQW 300 TDEDRPTLYP P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 16 | GGRLFNGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393237 | 9e-59 | GQ393237.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0202 SSR marker CGR5097 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622517.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A2P5W5A2 | 0.0 | A0A2P5W5A2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G040400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-40 | OBF binding protein 4 |