PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30006_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 335aa    MW: 37148.4 Da    PI: 5.0651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30006_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-153885148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
  Cotton_A_30006_BGI-A2_v1.0 38 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 85
                                678*******************************************97 PP
2Myb_DNA-binding52.51.1e-1691134146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Cotton_A_30006_BGI-A2_v1.0  91 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 134
                                 89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2273385IPR017930Myb domain
SuperFamilySSF466897.81E-2836132IPR009057Homeodomain-like
SMARTSM007172.3E-113787IPR001005SANT/Myb domain
PfamPF002498.6E-143885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223992IPR009057Homeodomain-like
CDDcd001672.63E-94185No hitNo description
PROSITE profilePS5129425.53486140IPR017930Myb domain
SMARTSM007179.0E-1690138IPR001005SANT/Myb domain
PfamPF002495.4E-1591134IPR001005SANT/Myb domain
CDDcd001675.68E-1193133No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2593141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMRKPDPSVK VISGGNTNTN TNTNTNTNNG TTTNKLRKGL WSPEEDDKLI NYMLTNGQGC  60
WSDVARNAGL QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIVHLHSILG NRWSQIAARL  120
PGRTDNEIKN FWNSTIKKRL KNLSSTPSPK VSNSSTSEPN NGAMQGLMSM QEQGILPMYM  180
DLPSASSNSS LQSMVLNHTG NSLPMLEHDL NVFGASGYFD PASCVTQVGV NGESFYGENE  240
MLGTVENGAE RELYVPPLES IGENLKTENT TVDVWNINNN PFNIINSKNN NSKSDNIGNA  300
AVGNFWIGEE IKVGEWDLED LMKDVSSFPF LDFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-273614025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5835913e-80JX583591.1 Gossypium hirsutum clone NBRI_GE16676 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644494.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1U8NXV10.0A0A1U8NXV1_GOSHI; transcription factor MYB46-like
STRINGGorai.001G138800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-68myb domain protein 46