PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29937_BGI-A2_v1.0 | ||||||||
Common Name | F383_28191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22468.5 Da PI: 5.9204 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131 | 4.8e-41 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k l++lpe++r da+ss+vyeA r+rdPvyG++g i++l Cotton_A_29937_BGI-A2_v1.0 64 PCAACKILRRRCVDKCVLAPYFPPTEPSKFIIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASSRIRDPVYGSAGAIFQL 146 7********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q++ l+a+la++++e Cotton_A_29937_BGI-A2_v1.0 147 QKQVSDLQAQLAKAQAE 163 ************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.944 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-41 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MENNERGSIS PISIPTTFSY SPSSSPSSPL SQFSPSFPSP DSQSSSPPSP PRAAAASPQL 60 VLGPCAACKI LRRRCVDKCV LAPYFPPTEP SKFIIAHRVF GASNIIKSLQ ELPESQRADA 120 VSSMVYEASS RIRDPVYGSA GAIFQLQKQV SDLQAQLAKA QAEVVTMQCQ QANVLTLILE 180 MSQSKETIDT TCFLDDTCVV SPWEPLRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 64 | 171 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 64 | 171 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614597.1 | 1e-148 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0B0MV52 | 1e-147 | A0A0B0MV52_GOSAR; LOB domain-containing 1-like protein | ||||
STRING | Gorai.012G094200.1 | 1e-110 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-69 | LOB domain-containing protein 1 |