PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29902_BGI-A2_v1.0
Common NameF383_02593, F383_12945
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 336aa    MW: 38118 Da    PI: 5.0701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29902_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12169212654
                                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Cotton_A_29902_BGI-A2_v1.0 169 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 212
                                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15166230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9169212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-5170216No hitNo description
Gene3DG3DSA:4.10.280.105.2E-16170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00697262303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELSQHGSLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTDE  60
IENPSFECPF SDQPYPFGDG FSVSEMDAST SPFPPAHEDY PSMVDDEDQL GLLTTDHHHH  120
QQHSLEEMKH SCKVEMEQTS NNIHGFNMGL FVEKKTKAKR LEGQPSKNLM AERRRRKRLN  180
DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELLEKVNKLK EDKTKLGSNH LSLVNNMKEL  240
KPNEMLVRNS PKFDVERRET DTRIDIQCAT KPGLLLSTVN TLEALGLEIQ ECVISCFNDF  300
SMQASCSEVA EQRTLMSTED IKQALFRNAG YGGTCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622299.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL18e-89BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0B0N8G70.0A0A0B0N8G7_GOSAR; Transcription factor bHLH93-like protein
TrEMBLA0A2P5YUD20.0A0A2P5YUD2_GOSBA; Uncharacterized protein
STRINGGorai.003G035900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-82beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]