PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29868_BGI-A2_v1.0
Common NameF383_20329
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 272aa    MW: 30063.5 Da    PI: 7.7001
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29868_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK71.21.3e-221561248
                      RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                                 +++s++d++ +Fslp+ dAA++Lgvc++vLK+iCR++G++RWPhRk
  Cotton_A_29868_BGI-A2_v1.0 15 AQSLSFDDIADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWPHRK 61
                                5799******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.266185IPR003035RWP-RK domain
PfamPF020421.0E-191862IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSLKHHHNSN STAAAQSLSF DDIADFFSLP LDDAASTLGV CTSVLKKICR ENGLDRWPHR  60
KFLAGKSVEE IKRHAARERR REIAELSKAH RQSSQPQPQN NEQPKLQGGS ALPNLQQQGI  120
RNIQTAQALN FSHQSLMTGA AMSDEFKFGF PSDGLSVITN KWWGSSKSDC NEVSDADGAE  180
TEGEDKHQTI EEPDDMANDK PGQNGKIEDG ISRQGSSLLA AVRKRSMEEG REALELGVYK  240
GRGMKRQGSR KASLLLRIFK SSLPDVWIHD PS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612182.10.0PREDICTED: uncharacterized protein LOC108457638 isoform X1
TrEMBLA0A0B0NGV30.0A0A0B0NGV3_GOSAR; Protein NLP2
STRINGGorai.012G040100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1165168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.12e-10Nin-like family protein