PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29819_BGI-A2_v1.0
Common NameF383_11756
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 287aa    MW: 30653.8 Da    PI: 7.1275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29819_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-111054244
                                SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
             Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                 +W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++
  Cotton_A_29819_BGI-A2_v1.0 10 SKWSREQDKAFENALATYPEDssdRWEKIAADVP-GKTLEEIKEHY 54
                                58********************************.**********9 PP
2Myb_DNA-binding42.12.1e-13119163347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Cotton_A_29819_BGI-A2_v1.0 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                                 6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.532762IPR017884SANT domain
SMARTSM007177.6E-10860IPR001005SANT/Myb domain
PfamPF002491.3E-81054IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-111066IPR009057Homeodomain-like
CDDcd001671.09E-91157No hitNo description
Gene3DG3DSA:1.10.10.601.2E-51155IPR009057Homeodomain-like
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466891.2E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17116166IPR006447Myb domain, plants
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
CDDcd001677.73E-10119164No hitNo description
PfamPF002492.6E-11119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10119162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTVEEADSSS KWSREQDKAF ENALATYPED SSDRWEKIAA DVPGKTLEEI KEHYELLEDD  60
VNRIESGCVP LPSYSSSESS AGDEGAGKKG SSHSGNCNSE SNHGSKNSRS DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNGDV SAPQGPITGQ SNGTASGGSA AKSTKQPPGH SVAPPGISVH GVPTMGQPIG  240
PLISAVGTPV NLPTPAHMAY GVRATLPGAV VPGAPVTYPM PHTSAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1812771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612322.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612323.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612324.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612325.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612326.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612327.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612328.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612329.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017612330.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-128SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0B0PST50.0A0A0B0PST5_GOSAR; Transcription factor MYB1R1
STRINGGorai.012G135600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-126MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]