PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29801_BGI-A2_v1.0
Common NameF383_05611
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 412aa    MW: 45464.7 Da    PI: 6.8292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29801_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.1e-15221266555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRR+ri++++++L++l+P+a      K +Ka++L +++eY+k+Lq
  Cotton_A_29801_BGI-A2_v1.0 221 HNLSERRRRHRIKQKMNTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 266
                                 9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-18214285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.212216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-15221270No hitNo description
Gene3DG3DSA:4.10.280.102.0E-18221285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12221266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSHCVVPNCW NLKHQSQEQV HFVEEENEAN RSSHISNPMS NHEVAELTWQ NGQLAFHGLN  60
RHLPTASSKP TWGISGDTLE SIVHQATCLH TQNHNFNLLQ HDQNQTPAVV SSIAASSGSS  120
AVVKKRARSS SDVCGEIPRG GVGEEYASAC ASANAAFCKE NDDSTMMTWA SHLSPQTMKA  180
KAIDEDYAYQ DGSENQDEEQ ETRGETDRSQ ATRRSRASAI HNLSERRRRH RIKQKMNTLQ  240
KLVPNASKTD KASMLDEVIE YLKQLQTQVE MMSMRNMAAQ MMMQQTRWQL QMSALAPMGV  300
GMGIGMLDDN NSLAPNPSPV TAPTHTFLPP PPPSFVTPPP MIPTRFAAAA QANSDASSHG  360
SIPSPDPYCT FLAQSMNMEL YNNKMAALYR PQINQTTQTS SNPSRSNNVA KD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641208.10.0PREDICTED: transcription factor PIF7-like
TrEMBLA0A0B0P9R00.0A0A0B0P9R0_GOSAR; Transcription factor UNE10-like protein
STRINGGorai.003G099500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141231822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-31bHLH family protein