PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29754_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 238aa    MW: 27079.7 Da    PI: 4.3579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29754_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-1462105755
                                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   Er+RR+++N++++ Lr l+P+      +K++Ka+i + A++YI++Lq
  Cotton_A_29754_BGI-A2_v1.0  62 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 105
                                 67*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.39355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1859119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1760123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1761110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1261105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-1464109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLWMENMENV SEEYNQNIWE PNYVFENEEY SWAMDELYDN DCSSSPDGAP ASASLSNSSN  60
ILSERNRRKK LNQRLFALRA LVPNITKMDK ASIIKDAIDY IQQLQEQEAT LQADIMELEN  120
NNNNNPKNHD LPMLLTSKNT NVFDSPIQLL QLNVTPMGDN TLLVSITCTK RADTMLKLCQ  180
LFESLNLKII TANLTVVSAN LFNTLFIRAN EKEKEELKMQ IQTAIAAFNG PQTPPITI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1460120969Transcription factor MYC2
5gnj_B5e-1460120969Transcription factor MYC2
5gnj_E5e-1460120969Transcription factor MYC2
5gnj_F5e-1460120969Transcription factor MYC2
5gnj_G5e-1460120969Transcription factor MYC2
5gnj_I5e-1460120969Transcription factor MYC2
5gnj_M5e-1460120969Transcription factor MYC2
5gnj_N5e-1460120969Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6150478e-43JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605899.11e-174PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV98e-76BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1U8JJE41e-168A0A1U8JJE4_GOSHI; transcription factor bHLH35-like isoform X2
STRINGGorai.009G002200.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2492134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-62bHLH family protein