PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29708_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 80aa MW: 9327.78 Da PI: 8.4747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29708_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	5e-07	40	60	3	23
HHHHHHHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeL 23 ++h+e+ErrRR+riN +++L Cotton_A_29708_BGI-A2_v1.0 40 KSHSEAERRRRERINAHLDTL 60 68****************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.65E-5	39	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-5	40	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	40	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MQWDFTILVL DNEKSELVVK SPVKVGKKSV AEEKVIAALK SHSEAERRRR ERINAHLDTL 60 LIIRCNYQVV QVEYKVEYEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624086.1	1e-35	PREDICTED: uncharacterized protein LOC108467811
TrEMBL	A0A0B0PXH4	5e-27	A0A0B0PXH4_GOSAR; Transcription factor bHLH30-like protein
STRING	Gorai.011G034000.1	5e-26	(Gossypium raimondii)