PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29672_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 341aa    MW: 37845.8 Da    PI: 6.6342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29672_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Cotton_A_29672_BGI-A2_v1.0 14 KGPWSPEEDAKLKEYIQKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                                79*********************************************97 PP

2Myb_DNA-binding36.88.9e-1269111246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_29672_BGI-A2_v1.0  69 GEFSDDEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                 789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.992962IPR017930Myb domain
SuperFamilySSF466893.48E-2711109IPR009057Homeodomain-like
SMARTSM007175.1E-131364IPR001005SANT/Myb domain
PfamPF002492.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-251569IPR009057Homeodomain-like
CDDcd001671.50E-91662No hitNo description
PROSITE profilePS5129421.76863117IPR017930Myb domain
SMARTSM007171.4E-1167115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
CDDcd001676.68E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIQ KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGM  120
VPQSQRKPHQ IPHASFSSLL QSSSPSSPSP SSSSPLLYNC SNNTYHTPAR SFSCFEASYS  180
SSFSNSSASC VNAASVLQPQ ESFLGQIQHY QLHDNGVQMF GGETSCSSSD GSCSNQISHN  240
KELENSNGTL YDGDHQQFGM YSYNNFYSEA ADGSQKLMMA LNGDHGTDGW SDHHKSSNGL  300
LDETETTLDY GIEGIKQLIS TSSCNSFIFD ENKEDENLLY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156441e-115HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605671.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2P5WN080.0A0A2P5WN08_GOSBA; Uncharacterized protein
STRINGGorai.006G162800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-77myb domain protein 36