PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29672_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 37845.8 Da PI: 6.6342 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl Cotton_A_29672_BGI-A2_v1.0 14 KGPWSPEEDAKLKEYIQKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.8 | 8.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Cotton_A_29672_BGI-A2_v1.0 69 GEFSDDEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.992 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.768 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.68E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIQ KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGM 120 VPQSQRKPHQ IPHASFSSLL QSSSPSSPSP SSSSPLLYNC SNNTYHTPAR SFSCFEASYS 180 SSFSNSSASC VNAASVLQPQ ESFLGQIQHY QLHDNGVQMF GGETSCSSSD GSCSNQISHN 240 KELENSNGTL YDGDHQQFGM YSYNNFYSEA ADGSQKLMMA LNGDHGTDGW SDHHKSSNGL 300 LDETETTLDY GIEGIKQLIS TSSCNSFIFD ENKEDENLLY Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ115644 | 1e-115 | HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605671.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A2P5WN08 | 0.0 | A0A2P5WN08_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G162800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-77 | myb domain protein 36 |