PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29667_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 353aa    MW: 38864.3 Da    PI: 7.0132
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29667_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.2e-27101183271
                     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkeknei 67 
                                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei
  Cotton_A_29667_BGI-A2_v1.0 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEI 179
                                 689********...*****999*******************************************************.***** PP

                     E2F_TDP  68 rwkg 71 
                                 +wkg
  Cotton_A_29667_BGI-A2_v1.0 180 QWKG 183
                                 **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.4E-1341353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.5E-4696189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-35100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-21103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.99E-42188291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-42190304No hitNo description
SMARTSM011387.8E-71190351IPR014889Transcription factor DP, C-terminal
PfamPF087812.5E-40191321IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVSGSNHIQN HNHHENGEKN PTLGGASRSW GTTVSGQSVS TSGSVGSPSS RSEQAMATPA  60
SENTFLRLNH LDIHGDDAGS QGAVGSKKKK RGQRAVAGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFADPGN SVASPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTSLS DIEDLKTERL GLRNRIDKKA AYLHELEEQF VGLQNLIQRN EQLYSSGNAS  240
GGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERPQTD  300
EMAHNFSADG EGSSMSAMYQ QQILAPPRTS TPGRPPTSPP LPGILKARVK HEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3994188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602936.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-168DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D2S4F50.0A0A0D2S4F5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HZA10.0A0A1U8HZA1_GOSHI; transcription factor-like protein DPB isoform X1
STRINGGorai.006G163100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-152Transcription factor DP