PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29620_BGI-A2_v1.0

Common Name

F383_06989

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 406aa MW: 44148.7 Da PI: 9.9902

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29620_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.9	5.3e-14	328	379	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + ee ++ Cotton_A_29620_BGI-A2_v1.0 328 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNEELLRKQEEVMEMQ 379 79************************************99988888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-12	324	390	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	326	377	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.13E-10	328	377	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-13	328	378	No hit	No description
Pfam	PF00170	3.0E-12	328	380	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.00E-25	328	382	No hit	No description
PROSITE pattern	PS00036	0	331	346	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MGSNLNFKRF GEAPSMEGSG SKAVGNFPLA RQSSIYSLTF DELQNTFGGL GKDFGSMNMD 60 ELLRNISTAE ETQGLMTASV PGGEGVSGGN LQRQGSLTLP RTLSQKTVEE VWKDLFKEND 120 GAKNVSNGGG GGGANLPQRQ QTLREMTLEE FLGRAGVVRE DMQPVGVPNN NGFFDNNSGL 180 ALQFQQTNGN NGFLSNNNSV LNQPPILPLD VSGAKSSHSQ QKQQPLFPKQ QTVAFAPSMH 240 LINTTHFPSP GARGSVVETS DLSMNTNLVQ SSGLQSGGMG IVGLPSPASH ISPDVISKNS 300 VDTTLSPVPY VLGRGRKRSA ALEKVVERRQ RRMIKNRESA ARSRARKQAY TLELEAEVAK 360 LKEMNEELLR KQEEVMEMQK NQMLETLNPA WGGKRQCLRR TLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MGSNLNFKRF GEAPSMEGSG SKAVGNFPLA RQSSIYSLTF DELQNTFGGL GKDFGSMNMD  60
ELLRNISTAE ETQGLMTASV PGGEGVSGGN LQRQGSLTLP RTLSQKTVEE VWKDLFKEND  120
GAKNVSNGGG GGGANLPQRQ QTLREMTLEE FLGRAGVVRE DMQPVGVPNN NGFFDNNSGL  180
ALQFQQTNGN NGFLSNNNSV LNQPPILPLD VSGAKSSHSQ QKQQPLFPKQ QTVAFAPSMH  240
LINTTHFPSP GARGSVVETS DLSMNTNLVQ SSGLQSGGMG IVGLPSPASH ISPDVISKNS  300
VDTTLSPVPY VLGRGRKRSA ALEKVVERRQ RRMIKNRESA ARSRARKQAY TLELEAEVAK  360
LKEMNEELLR KQEEVMEMQK NQMLETLNPA WGGKRQCLRR TLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964384	1e-104	JX964384.1 Gossypium hirsutum clone NBRI_TRANS-653 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644690.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_017644691.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_017644692.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_017644693.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q3	1e-119	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A0A0B0NJ24	0.0	A0A0B0NJ24_GOSAR; Abscisic acid-insensitive 5-like protein 4
STRING	Gorai.013G044500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	3e-88	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]