PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29614_BGI-A2_v1.0
Common NameF383_00550
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 265aa    MW: 29383.1 Da    PI: 7.1702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29614_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-1259106455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h   Er RR+++++ f++L  llP++    s+K +K++i+ +Av++I+ L+
  Cotton_A_29614_BGI-A2_v1.0  59 MHIWTERERRKKMRNMFSNLHALLPHL----SPKADKSTIVDEAVKHIQTLE 106
                                 56678*********************9....9*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1454116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.14155105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1458116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-1158110No hitNo description
PfamPF000106.2E-1060106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-763111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.2E-4187260No hitNo description
CDDcd048737.74E-4189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSATPGSFFL CENHPFPPPS NNNSGSGGAN GSEDNNQHEK QPLQDSTNNK RGGESDHEMH  60
IWTERERRKK MRNMFSNLHA LLPHLSPKAD KSTIVDEAVK HIQTLEKTLQ KLQKQKLDRL  120
QEGPNPIDLG HQDTTREAFM ADQVLSGNDA AAKDLIIKSN SVMVAQPRLQ FQTWTSSNVV  180
LNICGKEAQI SVCSPKKLGL FTTVCCILEK HHLEVISAHV SSQSNRSIFM IQAHVGSSGA  240
YNHQVSEVDE IFKQAAAEIM FCLTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5903531e-135JX590353.1 Gossypium hirsutum clone NBRI_GE25251 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644695.10.0PREDICTED: transcription factor bHLH95-like isoform X2
TrEMBLA0A0B0P8240.0A0A0B0P824_GOSAR; Transcription factor bHLH95-like protein
STRINGGorai.013G045100.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-46bHLH family protein