PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29468_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 574aa MW: 62466.3 Da PI: 6.9119 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 327 | 385 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Cotton_A_29468_BGI-A2_v1.0 327 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 385 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-31 | 318 | 387 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.426 | 321 | 387 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-27 | 324 | 387 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 326 | 386 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 328 | 385 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MGKRCGLALH SLSNLFPDNT SSSSSSSTRL NQNPNMFHFP VSLPCSRDDP HDSGIGTSSD 60 ENRLPVDELD FFSAATVNVK KENFHADCAR LDVNTGLNLL TANAGSDQST VDDGVSSDVD 120 DKRVKNEVAQ LQVELKRMNA ENQKLKDMVN DVSNNYSALQ MHLVNLMQQH QRHEVNNLNT 180 SVSSRSDDVS KGLVLSSKSF DMDIQINEVK EQEASLIVPR QFMDLRPSGI AETDHEPSHS 240 SSEERTPSGS PPNNVQVTSP KDYLKTKNPV SQLDQESSSF RDGKRIGREE SPESENLGRN 300 KLQKMNPSKP IDQATEATMR KARVSISDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV 360 RKQVQRCAED RTILITTYEG NHNHPLPPAA MAMASTTASA ATMLLSGSMH SGDGMMNPNL 420 FPRTMLPCSS MATISASAPF PTVTLDLTHS PNALQFQRPN TQFHVPFPGQ PQNSTSTSAT 480 QFPQVFGQAL YNQSKFSGLQ LSQDIVSSSQ LQQPQQSTLA DTVSAATAAI ANDPSFTAAL 540 AAAITSIIRG AHPNSSSNTS NNNNNNGNTT NSRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 326 | 389 | 14 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669829 | 0.0 | KF669829.1 Gossypium hirsutum WRKY transcription factor 87 (WRKY87) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644822.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-145 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A068LCA3 | 0.0 | A0A068LCA3_GOSHI; WRKY transcription factor 87 | ||||
STRING | Gorai.010G182500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-114 | WRKY family protein |