PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29442_BGI-A2_v1.0 | ||||||||
Common Name | F383_25228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 555aa MW: 60412.3 Da PI: 4.672 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Cotton_A_29442_BGI-A2_v1.0 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ Cotton_A_29442_BGI-A2_v1.0 93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.037 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-30 | 39 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.39E-12 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.872 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-17 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-12 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MSHTKNERED GILSKDQTES SLIDDGNCGG GTGGGVVLKK GPWTSAEDAI LIDYVKKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQALQD SHGTSAVNGG DKGPHDILQN 180 NSYEIPDVIF DSLKTSQNVL PYVPELPDIS TSSMLMKGLG SQYCSFMPPT IHRQKRLREA 240 TAFFPGYTGA VKNECPLFEQ FQDDISDKAA QSFGLSFPIE PDPATKNSLQ FGVFPGSHNL 300 SNGNFSASEP PLEAVKLELP SLQYPETELG NWGTFSCPPP LLESVDAFIQ SPPPPSIAES 360 DSLSPRNSGL LDALLHEAKT LSSAKNHASE KSSNSATPGD VAESSTFNIC ETEWENCGEP 420 LSPMGHSATS LLSECISASG STLDEQPPAE TFTESQVKSE PADHVFTPEI QNEAPIRLDS 480 CHPDTLLASN WLEQDSGYDK DQTIMTDSIA ALLGDDLSTE YKNMAAGTSI SSQAWGLGSC 540 AWNNMPAVCQ MSELP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459146 | 9e-57 | AJ459146.1 Gossypium hirsutum partial myb118 gene, clone pGhMYB118. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643376.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_017643377.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_017643378.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A0B0MQC6 | 0.0 | A0A0B0MQC6_GOSAR; Transcription factor GAMYB | ||||
STRING | Gorai.010G212500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-144 | myb domain protein 33 |