PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29358_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 300aa MW: 33746.9 Da PI: 7.441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29358_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.2e-50	21	147	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pGfrFhPtdeelv +yL++kv++k+l++ + ik++diyk++PwdLpk + +++e e yfF++r +ky+++ r+nrat sg+Wk Cotton_A_29358_BGI-A2_v1.0 21 PGFRFHPTDEELVGFYLQRKVDNKPLKI-DLIKQIDIYKFDPWDLPKaSSREGEIESYFFCRRGRKYRNSIRPNRATGSGFWK 102 9*************************.99***********51444444599********************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg dk+++s+ +++ +glkktLv+y+g+a kg+ktdW+mhe+rl Cotton_A_29358_BGI-A2_v1.0 103 ATGIDKPIYSNeGSACIGLKKTLVYYRGTAGKGTKTDWMMHEFRL 147 ******955666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.599	19	182	IPR003441	NAC domain
SuperFamily	SSF101941	1.19E-54	20	182	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MNGVVQACAD NKDEEEDAPL PGFRFHPTDE ELVGFYLQRK VDNKPLKIDL IKQIDIYKFD 60 PWDLPKASSR EGEIESYFFC RRGRKYRNSI RPNRATGSGF WKATGIDKPI YSNEGSACIG 120 LKKTLVYYRG TAGKGTKTDW MMHEFRLPNS THINASNATL SNPKSLAAEE AEVWTICRIF 180 KRSVSHRKYT PDWREIASNR TSTATPSPQI ICSMGLGSNI HETCIAFGSP LVQSCDEKPG 240 FSGMNGRNQW HAELLSIAQP SSMVSSSSFS SCPENNDFFT HANWDELKSV VEFAFDPFSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	21	188	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	21	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	21	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	21	188	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	21	188	22	174	NAC domain-containing protein 19
3swm_B	3e-45	21	188	22	174	NAC domain-containing protein 19
3swm_C	3e-45	21	188	22	174	NAC domain-containing protein 19
3swm_D	3e-45	21	188	22	174	NAC domain-containing protein 19
3swp_A	3e-45	21	188	22	174	NAC domain-containing protein 19
3swp_B	3e-45	21	188	22	174	NAC domain-containing protein 19
3swp_C	3e-45	21	188	22	174	NAC domain-containing protein 19
3swp_D	3e-45	21	188	22	174	NAC domain-containing protein 19
4dul_A	2e-45	21	188	19	171	NAC domain-containing protein 19
4dul_B	2e-45	21	188	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847209	0.0	KC847209.1 Gossypium hirsutum NAC domain protein NAC32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605765.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2P5YXI4	0.0	A0A2P5YXI4_GOSBA; Uncharacterized protein
STRING	Gorai.009G357700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	4e-92	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]