PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29356_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 28205.3 Da PI: 10.4763 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.9 | 1e-15 | 142 | 203 | 3 | 65 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65 pGfr hP eelv +yL+++ve+k++++ + ik++diy+++ wdLp++ +++++e yfF+kr Cotton_A_29356_BGI-A2_v1.0 142 PGFRLHPIYEELVGFYLRRRVENKPVKI-QLIKRMDIYRYDRWDLPRAESEGQSESYFFCKRG 203 9***************************.89***************665667789*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-14 | 138 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.76 | 140 | 241 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-6 | 142 | 203 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MFRIQLTNLQ KFKDRERVGT TSKQKQKFTH TARSKSFARV ADDKEKLKDK RAEYEVIASS 60 DSSVNLNDID NRIITKILGP ERYDRVRFQG YFVNPTQYFR SSSQQYMPSR NQAQAEVQSP 120 IFVSFTATKK KRKMKVEDVP LPGFRLHPIY EELVGFYLRR RVENKPVKIQ LIKRMDIYRY 180 DRWDLPRAES EGQSESYFFC KRGSIGTALD RIGLPDRGFG KQLGLIELFI HMEVNTISAL 240 G |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX596208 | 4e-60 | JX596208.1 Gossypium hirsutum clone NBRI_GE32728 microsatellite sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-28 | NAC domain containing protein 42 |