PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29306_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 131aa    MW: 14816.2 Da    PI: 9.7149
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29306_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB140.93.1e-44494393
                       NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                                eqd +lPianv+rimk++lP  ak+sk+aket+qecv+efisfvts+asdkc++e rkti gdd++ al+ +G+++y+e++  yl
  Cotton_A_29306_BGI-A2_v1.0  4 EQDPLLPIANVGRIMKRILPPTAKVSKEAKETMQECVTEFISFVTSDASDKCRKESRKTIYGDDICRALGAVGLDNYAEAIVRYL 88
                                89*********************************************************************************** PP

                       NF-YB 88 kkyrel 93
                                +kyr +
  Cotton_A_29306_BGI-A2_v1.0 89 HKYRVA 94
                                ****76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-433112IPR009072Histone-fold
SuperFamilySSF471133.26E-345105IPR009072Histone-fold
PfamPF008088.5E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-123654No hitNo description
PRINTSPR006151.3E-125573No hitNo description
PRINTSPR006151.3E-127492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MGDEQDPLLP IANVGRIMKR ILPPTAKVSK EAKETMQECV TEFISFVTSD ASDKCRKESR  60
KTIYGDDICR ALGAVGLDNY AEAIVRYLHK YRVAALNQHK ATTSSFEDKM KNRIEVASHL  120
IKRMKLQLNK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-37492391Transcription factor HapC (Eurofung)
4g92_B1e-37492391Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628765.12e-94PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-44NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P5X2243e-92A0A2P5X224_GOSBA; Uncharacterized protein
STRINGGorai.007G298300.19e-68(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-46nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]