PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29202_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33859.8 Da PI: 6.0397 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyW Cotton_A_29202_BGI-A2_v1.0 10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYW 91 79*************************655.78***************88888999*************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkd++v++ ++++vg++ktLvfy+ rap+g kt W+mhe+rle Cotton_A_29202_BGI-A2_v1.0 92 KATGKDRTVVDPrTEQVVGMRKTLVFYRDRAPNGIKTGWIMHEFRLE 138 **********9967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.964 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLVEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VDPRTEQVVG MRKTLVFYRD 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGG ENSTRLSSPM ILEPSIHAPS 180 LADQTTMACG YHHQINSLAT KPAHQSHGQS LLNLLQYNYH QENDDDNKNN NNLHCSNNEV 240 SSKVDDDYEF LWDMNMEENS LGDDDDHHHH LIHGVASNSD DMRFEIDNSM VFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914148 | 0.0 | JQ914148.1 Gossypium hirsutum NAC domain protein 17 (NAC17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642528.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 3e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | U5IJN6 | 0.0 | U5IJN6_GOSHI; NAC domain protein 17 | ||||
STRING | Gorai.001G254300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-94 | NAC domain containing protein 74 |