PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29176_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 632aa    MW: 70749.8 Da    PI: 4.5119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29176_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-5191351128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 l+pGfrFhPtdeelv +yLk+k+ +++   +++i+ +diy++ePwdLp k k+k+++ ewyfFs  dkky +g+r+nrat++g
  Cotton_A_29176_BGI-A2_v1.0   9 LAPGFRFHPTDEELVRYYLKRKILNRP--SFDAISVIDIYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERG 89 
                                 579**********************99..3478**************95347777888************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWk+tgkd+++   ++++vg+kktLv++kgrap+ge+t+Wvmheyrl
  Cotton_A_29176_BGI-A2_v1.0  90 YWKTTGKDRAIRF-RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135
                                 ************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-557140IPR003441NAC domain
PROSITE profilePS5100551.6999167IPR003441NAC domain
PfamPF023657.3E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MGRDSATSLA PGFRFHPTDE ELVRYYLKRK ILNRPSFDAI SVIDIYRSEP WDLPDKSKLK  60
SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRAI RFRERVVGMK KTLVYHKGRA  120
PRGERTNWVM HEYRLTDETL EKGGIQQKSG SGPKNGEQYG APFIEEEWED DEAVFVPGQQ  180
DASAYEEAAN EDAFVEVNDI DQNLDIGNPS ENNILPLNGY CGESSNHVEH SREFSEDDQK  240
PPNSMHENAF LPSSFYYGES SNCGEHSMEF KEDFQKPIRM HATEGDSKPH HELVVADSPE  300
QDLIATNGKP VKDEYVLEPI ENITSANYVL GDPYLDVTSY LPTNDELFLE ANDFSNPIYP  360
ESELFDINEY LSFDDADDQS LAFDYDEIVG SEIPVSGQEP LTETHTNEGT EQDLNAGEHV  420
EEHGNSDASS SKQELEATEF DLGTKYPFMK RASHMLGSLP APPAFASEFP PKDAAIKLNS  480
ASHASSSVHV MAGMIRITDT TSSGNRLDWS YGKNGNLNIV LSFSLPQGDI NSSSFLPMAS  540
LLTGKTGPVS ARGWFFLMLF SVLIISASVK IGTCFCTSPS RMVHPIKLQV YMSKMLIIML  600
LGFGASVEYG HVGMLFDIGS ILLKFFMYLE GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42413510140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141440.0JQ914144.1 Gossypium hirsutum NAC domain protein 13 (NAC13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606964.10.0PREDICTED: NAC domain-containing protein 53
TrEMBLA0A2P5W8900.0A0A2P5W890_GOSBA; Uncharacterized protein
STRINGGorai.009G309000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-146NAC domain containing protein 2